YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47552977, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQLFRYPLH QIPLVAMAII IALSVHEFAH AYVAYKFGDD TAKKQGRLTL SPMAHLDPIG  60
   61 MIAVLILGFG WARPVPVNPY NFKRPRLAGI LVSIAGPISN LILSAIGLII WYSLLKFGVL 120
  121 YSIPSAVADT LAQFFQIFIT LNIVLLVFNL LPIPPLDGYR VVEDLAPTNI RAKMTQYEKY 180
  181 GAIALLILVI TPLSNYTIQP IFNVVIPYVF VFLDSIIAPI FGLL

Type	Start	End	Confidence
Cytoplasmic	1	8	0.91
Transmembrane Helix	9	30	0.88
Non-Cytoplasmic	31	53	0.90
Transmembrane Helix	54	75	0.86
Cytoplasmic	76	88	0.85
Transmembrane Helix	89	112	0.92
Non-Cytoplasmic	113	131	0.86
Transmembrane Helix	132	153	0.88
Cytoplasmic	154	179	0.88
Transmembrane Helix	180	198	0.85
Non-Cytoplasmic	199	203	0.70
Transmembrane Helix	204	223	0.85
Cytoplasmic	224	224	0.84