YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47569831, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDMSSELEQN TRSSKKRSKR KSIKWFILIP FFLLIFGGVG YGSLIYNKAK AVVSDAYAKI  60
   61 DKSSKRDKEV EPLKDNISIL IMGVDGSEMR KSQYGEAVRT DALLLATINK DDKSVKLVSI 120
  121 PRDSRVYIPS RKKLDKITHA HVFGGVESTR DTVERFLNVP VDYYVKFNFE SFVQIVDSLG 180
  181 GIDIDVPVTF TEQDSKDQAG MIHLEKGYQH LNGEQALALA RTRKIDSDAM RGQRQQLVIE 240
  241 AIAKKAMSVQ SISKMGSLLD AVDKNMKTNL TFDDMLAITK NMAGSNLEME KMQVEGTDKR 300
  301 IGGIYYYIPN EKNVKDISNK LNQHLGVTPK SVRNE

Type	Start	End	Confidence
Cytoplasmic	1	21	0.97
Transmembrane Helix	22	45	0.87
Non-Cytoplasmic	46	335	0.99