YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47569690, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.80
Transmembrane Helix	10	30	0.92
Non-Cytoplasmic	31	99	0.83
Transmembrane Helix	100	122	0.87
Cytoplasmic	123	130	0.71
Transmembrane Helix	131	152	0.91
Non-Cytoplasmic	153	159	0.55
Transmembrane Helix	160	177	0.90
Cytoplasmic	178	182	0.65
Transmembrane Helix	183	199	0.86
Non-Cytoplasmic	200	203	0.58
Transmembrane Helix	204	221	0.74
Cytoplasmic	222	225	0.93
Transmembrane Helix	226	246	0.89
Non-Cytoplasmic	247	385	0.95
Transmembrane Helix	386	404	0.94
Cytoplasmic	405	415	0.86
Transmembrane Helix	416	438	0.89
Non-Cytoplasmic	439	446	0.80
Transmembrane Helix	447	467	0.95
Cytoplasmic	468	472	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQTKWLKWEV IAVVVAGVVM LGLLLIKPIV GLADNGDFER IMIQIGLAYP DPNEARVDKY  60
   61 FSFIHHLYAY VNPAAGDYVS SQLFLMVPAL WIGKILPGPW FDIRVLAIEY IMIFLLALYL 120
  121 IVKLNKTNNK IVNGFLVTLT IAVFADIGYI LYFNSMYGEA VTYVFLFLTI ALGVQLARQK 180
  181 HPSVWLVILF YISAIMLACS KTQYTPAGFI AALLTIRLWF IRKDKVWRIV IVSMTALLLI 240
  241 LSFICYKSSP AWIDKINIYQ TVFYGVLKDS PNPEQDLRDL GVDPELAVNA GTHFWSNAAI 300
  301 PQEDPRLHKE LYNKIKFPDI AKFYLTHPQR FWSKLEATSE YAWTIRPSVD GVAFLGNYEK 360
  361 KDNPVPATQV ETFSLWSHVK EQYHPNGFIW IVLLYILYGL GILLEYRRAK THSERFIPDI 420
  421 FTAVAIIGMI SYVVPFVGSG EGDFAKHLFL FTVCLDVMLV SGIWWLAKGR LQ