YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47553716, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFVYINQHV LNNLLYILSS IFIFYFIYDS GRYVKKYKKL LIILCTSIPL ILCMRYPIYM  60
   61 DESCIHDLRQ IPVIIGTLYG GFPVGIILLA ILLIIRFSFY GFSMLTMLVY GIMFIITAFA 120
  121 SAKFNTYNRK IKVAYAMFLT FFLAIFTTVI VLTLSDFEVN NLYIIYFIIL PTVLMLFVVY 180
  181 FNEVLKDAVC MRSKLIKMEK MEIVSQLAAS ISHEVRNPLT VVKGFTQLLK TPNLTPESRD 240
  241 EYIKHILEEL HHAQGIIDDY LTFAKPASEK LDEISVEQEL NRVINMILPL CNMNTIHITK 300
  301 DFSTATIVGN KQHFQQCFLN LLKNGIEAMP NGGTLNISSS ISNNKVIIRI EDSGIGMSQE 360
  361 QINRFGEPYF STKTKGTGLG TMVAVKIIET MQGSLKIRSV INKGTTLTIT FPKCNKNSSN 420
  421 NK

Type	Start	End	Confidence
Cytoplasmic	1	8	0.84
Transmembrane Helix	9	28	0.92
Non-Cytoplasmic	29	39	0.70
Transmembrane Helix	40	59	0.87
Cytoplasmic	60	72	0.87
Transmembrane Helix	73	95	0.91
Non-Cytoplasmic	96	101	0.68
Transmembrane Helix	102	122	0.90
Cytoplasmic	123	132	0.77
Transmembrane Helix	133	154	0.94
Non-Cytoplasmic	155	161	0.85
Transmembrane Helix	162	184	0.91
Cytoplasmic	185	422	0.95