YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47569370, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.66
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKKILFWIL GILGVLIIGG GIYAYNVYSS VSNTLKEVHQ PLKRDQNNNK VEEKVSKGEP  60
   61 VSILLLGADE RGNDKGRSDS LMVITLNPKN NSMKTVSIPR DTYTEIVGKG KSDKINHAYA 120
  121 FGGVDMSVAT VENFLNVPIN YYIEVNMEGF KDIVEAVGGV DVNNDLEFSL EGKHFQKGNI 180
  181 HLTGDQALAY TRMRKEDPRG DFGRQMRQRQ VMQAVIKKGA SFSSLTGYGD VLAAIQKNVK 240
  241 TNLTQDQMFD MQKNYKDCLK NSEDIQIPGD GHKAADGIWY YYVPDAAKQD LTNKLRAHLE 300
  301 VTK

Type	Start	End	Confidence
Cytoplasmic	1	5	0.61
Transmembrane Helix	6	25	0.64
Non-Cytoplasmic	26	303	0.99