YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47554139, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.79
Transmembrane Helix	6	26	0.93
Cytoplasmic	27	36	0.76
Transmembrane Helix	37	59	0.70
Non-Cytoplasmic	60	68	0.66
Transmembrane Helix	69	91	0.86
Cytoplasmic	92	126	0.93
Transmembrane Helix	127	150	0.86
Non-Cytoplasmic	151	159	0.84
Transmembrane Helix	160	181	0.91
Cytoplasmic	182	187	0.73
Transmembrane Helix	188	209	0.86
Non-Cytoplasmic	210	232	0.88
Transmembrane Helix	233	255	0.86
Cytoplasmic	256	272	0.91
Transmembrane Helix	273	296	0.90
Non-Cytoplasmic	297	315	0.96
Transmembrane Helix	316	338	0.84
Cytoplasmic	339	367	0.86
Transmembrane Helix	368	387	0.97
Non-Cytoplasmic	388	394	0.80
Transmembrane Helix	395	417	0.90
Cytoplasmic	418	423	0.86
Transmembrane Helix	424	443	0.93
Non-Cytoplasmic	444	450	0.78
Transmembrane Helix	451	471	0.91
Cytoplasmic	472	492	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTQMLTLTS ISIYMLGMLV IGYFAYKRTS NLTDYMLGGR TLGPAVTALS AGASDMSGWL  60
   61 LMGLPGAMFS VGLSSSWIAI GLTLGAYANW LYVAPRLRTY SEIANNSITI PEFLEHRFHD 120
  121 KSHMLRLVSG LVIMIFFTFY VASGLVSGAV LFENSFGMNY HVGLFIVAGV VVAYTLFGGF 180
  181 LAVSWTDFVQ GIIMVVALIL VPIVTIMNSN GLGPAFDTIR SVDPTRLDIF KGASTLGIIS 240
  241 LFAWGLGYVG QPHIIVRFMA ISSVKELKSA RRIGMSWMIF SVVGAMFTGL IGIAYYSQQE 300
  301 LTLSNPETIF LELGKILFHP LITGFLLAAI LAAIMSTISS QLLVTSSAVT EDLYRTFFKR 360
  361 SASDKELVFV GRMAVLVIAL VGCALAFKQN DTILALVGYA WAGFGSSFGP AILLSLYWKR 420
  421 MTKWGALAGM ISGAATVIIW TQFKFLKEFL YEMIPGFTIS LLVIVIVSLL TQPSKETTEQ 480
  481 FENFEKQHSD NL