YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47554180, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.95
Transmembrane Helix	9	29	0.94
Non-Cytoplasmic	30	42	0.80
Transmembrane Helix	43	64	0.92
Cytoplasmic	65	75	0.80
Transmembrane Helix	76	98	0.86
Non-Cytoplasmic	99	119	0.90
Transmembrane Helix	120	141	0.92
Cytoplasmic	142	149	0.94
Transmembrane Helix	150	172	0.89
Non-Cytoplasmic	173	196	0.92
Transmembrane Helix	197	216	0.94
Cytoplasmic	217	233	0.79
Transmembrane Helix	234	254	0.88
Non-Cytoplasmic	255	280	0.88
Transmembrane Helix	281	304	0.89
Cytoplasmic	305	314	0.85
Transmembrane Helix	315	336	0.89
Non-Cytoplasmic	337	341	0.69
Transmembrane Helix	342	363	0.90
Cytoplasmic	364	372	0.72
Transmembrane Helix	373	392	0.90
Non-Cytoplasmic	393	412	0.87
Transmembrane Helix	413	436	0.86
Cytoplasmic	437	451	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTVSKKHIF FTGLMLFSLF FGAGNLIFPP MLGQNAGENF WPAMIGFLLT GVGLPLLTVI  60
   61 AISLSGNGMQ QLASHVHPLF GIFFTVVVYI AIGPSMGIPR VANVAYEMGV SSFLPETIRS 120
  121 SSLALFVYTI IFFAIVYWLS LNPSKLVDRI GNILTPILLL SIFLLFVKSV FTPLGQSGPA 180
  181 MQEYQTSPIF KGFMEGYLTM DTISALAFGI IVVNAIRSKG VKDRKSIAIA TAKAGLIAAT 240
  241 GLVLVYGALG WLGATSVSLG YAKNGGQLLT VIVQQLFGPY GLLLLSLIVT LACLTTCVGL 300
  301 VSACSQYFST LLTKFSYKMF ASIICVLGLL VANLGLTKII SISVPILLVV YPVAIVLVLL 360
  361 SLLHKYFGGY RSVYVGALIG AAIVSVFDGL KQGGILVSFI TSHFEFIPLY NEGIGWLVPA 420
  421 LAGALIGFTI AKLSGAKKVP LLTESREVKA S