YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47554327, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNRFLKQLQ NMKMNKKSLG AVALTAGIIG TTLIPQNAYA HGFVEKPSSR SALCSPTYGA  60
   61 LNVNCGSVMY EPQSLEAPKG FPQGGPVDGQ IASAGGKFGG VLDQQTADRW FKNTITGGEN 120
  121 TFTWKYTAPH LTSKWHYYIT KKGWNPNKAL TRADFEPIGT VQHDGSAASN HLTHKINVPI 180
  181 DRSGYHVILA VWDVADTANA FYNVIDVNLI NDVKPDTEAP SIPNGIQAQK VTAHSIELAW 240
  241 TASTDNVGVK GYQIFRNGEM IDTVPGTHFI DKKLQPSTEY SYTVKAIDAA GNASKESAKL 300
  301 TVKTTVEAPD TEAPTQPKGL HSMGTTTSSV DLMWSPSDDN IGVDHYDIYR ETEGSMKKIA 360
  361 TSNTTSYMDK NLLPNTTYKY VVKAVDVAGN ESVQSDIFAI TTKTESASYE EWDATKAYEK 420
  421 GDRVLYKGKI YEAVQSYKGN GDPNWIYALS LWKTV

Type	Start	End	Confidence
Signal Peptide	1	40	0.76
N-region	1	31
H-region	32	37
C-region	38	40
Cleavage Site	40	41
Non-Cytoplasmic	41	455	0.99