YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47568352, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRLKWGRLT ILVVIVLGIC WFLFQGTQKS VTNVEGQPLQ VAELPKTGLT EKVVPPKYIP  60
   61 PEIDAKAAMI IDASNGDVIY QQNENEAFAP ASMSKMMTAY LLLENVHNGK VRWEDPVKMS 120
  121 AKAAQTEGAR IPVQVNDTLT VKDLYHALMI ESANNSAVAL AEHMAKTEKD FVQLMNAKAK 180
  181 QLKMSDYAKF ANASGLQESD GSETKMTAAD VANLAYHLIK DYPEILEVTH LRQSQLAFNN 240
  241 INVISTNDML NKNNKALYIE GIDGLKTGFT DSAGYCFTGT AKQGDTRIIT VVMGTKGKTK 300
  301 RFTETNKLMS YAFGLVN

Type	Start	End	Confidence
Signal Peptide	1	26	0.54
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	317	0.99