YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47568309, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.97
Transmembrane Helix	7	29	0.90
Non-Cytoplasmic	30	41	0.81
Transmembrane Helix	42	65	0.90
Cytoplasmic	66	77	0.90
Transmembrane Helix	78	100	0.90
Non-Cytoplasmic	101	119	0.94
Transmembrane Helix	120	142	0.89
Cytoplasmic	143	153	0.85
Transmembrane Helix	154	175	0.90
Non-Cytoplasmic	176	196	0.92
Transmembrane Helix	197	216	0.95
Cytoplasmic	217	228	0.89
Transmembrane Helix	229	250	0.89
Non-Cytoplasmic	251	283	0.90
Transmembrane Helix	284	309	0.85
Cytoplasmic	310	319	0.80
Transmembrane Helix	320	342	0.87
Non-Cytoplasmic	343	347	0.70
Transmembrane Helix	348	368	0.91
Cytoplasmic	369	376	0.81
Transmembrane Helix	377	396	0.92
Non-Cytoplasmic	397	413	0.88
Transmembrane Helix	414	435	0.90
Cytoplasmic	436	452	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANKVPFSFI VVIGLMLFAL FFGAGNLIFP AMLGQSAGES VWIANAGFLV TGVGLPLLGV  60
   61 LAFGFSGKDD LQSLASRAHP VFGIVFTTVL YLAIGPLFAI PRTGNVSYEI GLKPFMPEGL 120
  121 GSTPLILFTI VFFSITCFFS LNPAKIVDIV GKILTPIKLT FIGILVIVAF IHPIGEMQAP 180
  181 VEAYTSHAFF KGFQEGYLTM DTLASFVFGI IIINAIKEKG AKTKTQIMVV CAKATIIAAS 240
  241 ILAIIYTALS YMGASSVAKL GHLENGGEVL AKVSNYYFGS YGGVLLGLMI TVACLTTSVG 300
  301 LVSACSSFFH KLFPNVPYKA IAITLCIFSA IVANVGLTQL IAVSVPVLTA IYPLAIVLIF 360
  361 LTFFHSLFKG RAEVYQVSLT VTFIISLFDG LSAAGVNVEV VTQVFTKFLP MQEVGLGWIF 420
  421 PAIISGCIGY GISVLKLKNQ IQPAANTNKK IG