YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47555094, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKVKKQVNL SKILIQYIFA FSIGTIALVA FFMILFQVGV NAEVILPANY YEKQIESQRD  60
   61 AIVKAEQEDD QILKQYKYAL YDFSGNVIQG SINKDYAGQI WNNIHNDEKG DSTYYYAVIE 120
  121 RDKDICVILY TLHATFKNPS LQKYLPSPEV CEIVLFILLF VAEVIFLSRS FGKSLSKEMM 180
  181 ILRKVTDKIQ KEDLDFQVEQ SKIKEVNEVL TSLVKMKDEL NHSLRTQWNM ETNRREQIAA 240
  241 LAHDIKTPLT ILRGNAELLN ESTLDSNQKK CNKHILKSID EMEIYMKSLL DITKCEEGAP 300
  301 LQFKQTDLHD FIYNIIEESA ICVLDKQLNL IENVRDIPNF IPIDETALKR AIMNIMMNAI 360
  361 EYSPTKGDLM FSVEMISEKL QFIVEDSGRG FTEEEMHSAT EQFYRGDKSR NSKDHHGMGL 420
  421 YIAKSFAKQH GGNLYLSNSE KLHGAKVVLE ISA

Type	Start	End	Confidence
Cytoplasmic	1	12	0.96
Transmembrane Helix	13	36	0.88
Non-Cytoplasmic	37	453	0.64