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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|47567835, gi|...
Protein type: Transmembrane
Type Confidence: 0.73
Topology Confidence: 0.66
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKKQKQQKK KTHVPFRLNV LFFCVFLMFS AVIVRLGYVQ IVRGEEYKNE VERKENSTIS  60
   61 NPVPRGKIFD RFGRPVVDNA AVRTITFTKM KGSTAEARLE TAKRLADLIE VPTDKLTDRD 120
  121 KKDYWLAIHK EEAKEKITNK DRQEFKDKKI DDKELDERQR NRVTEEEVNQ LSAKDLEILA 180
  181 IKSKMDGGYA MTPQVIKKDA TEQEYAIISE NLATLPGVDT NVDWDRKYTY DDLFRSVLGG 240
  241 VSTSDEGLPR ERLDYYLVRD YNRNERVGKS YLEQQYEDSL HGTKAEVKNV TDKNGNILET 300
  301 INVSKGQSGN DLNLTIDMEL QKRVEEIITK NLLKYKGGQP LLDRAFVVMM NPKNGEVLSM 360
  361 AGKQLVEENG ETKVQDFALG TMTSSYPMGS TVKGATILTG YQTGAIQPGS VQLDEPIVLK 420
  421 GPLKKSSWKT MGYIDDLTAL KMSSNVYMFK TAMNIAGVPY VRGGTLDIQQ KSYDTMRYYF 480
  481 GQFGLGVKTG IDLPNETAGQ RGRTDKMPGF LLDLSIGQYD TYTPLQLAQY VSTIANGGYR 540
  541 MQPQVVKEIR QPAAKPDEVG KVVHSMEPKV LNRVDMPESQ IKRVQEGFKQ VFNSPGGTAL 600
  601 SYFSTAKYTA AGKTGTAQTV YGGDKEIGRN AKGERKETYN LTLVGYAPFE DPEVAFSVVV 660
  661 PWVDDKSGIN GYISRDIMDA YFDLKKVENG EATKDEIDKK NKEQDDE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle