YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47558297, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYIPNMMTI ANFVCGLLAI HAVFVRDMYG AVMFIITGMV FDLFDGMIAR KLDAVSEIGG  60
   61 ELDSFADLVT FGVAPSILAY SASLKDLQSI GMICALAYSI CGMLRLARFN TQQSKLSTFI 120
  121 GMPIPFAAMC LLILCLLNNP VSVAVGTCAL AYLMVSKIKF PHFKKDISES LKSERWD

Type	Start	End	Confidence
Cytoplasmic	1	6	0.81
Transmembrane Helix	7	25	0.86
Non-Cytoplasmic	26	29	0.64
Transmembrane Helix	30	49	0.72
Cytoplasmic	50	63	0.59
Transmembrane Helix	64	82	0.67
Non-Cytoplasmic	83	88	0.66
Transmembrane Helix	89	107	0.93
Cytoplasmic	108	115	0.79
Transmembrane Helix	116	137	0.85
Non-Cytoplasmic	138	140	0.71
Transmembrane Helix	141	160	0.73
Cytoplasmic	161	177	0.73