YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47564718, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQNPSLQEN TRSKPKKSKK KIKIIISVIL FFLIVGGGYT WFLVNKASSA VRNAAHDLAR  60
   61 GDKSDLRDKA VKPITNNVSV LVMGVDESDV RGKEYGEAIR TDALLLATFN KDSKTVKLLS 120
  121 IPRDTYTYIP VEKKKDKITH AHAYGSTKNG KDGGPQASID AVEKLLNVPV DYFVKFNFKS 180
  181 FMKIVDDLGG IEVDVPVEFT EQDSNDNAGA IHLKKGVQKL NSEEALALAR TRHIDSDAMR 240
  241 GQRQQLVIEA ILKKLTSVGS VTKVGNIIDD INGQFVTNLT FDDMLSFYKY GADSSIEKLQ 300
  301 IQGDDCYMEK GDDTCSKSAG GGRTYYYNPD KKELAKVTND LRSHLGLPAY TKTDSDSKKT 360
  361 NTEKTKESKS ENTSERESSN NEVKTKNKNS NEDTETSSKD NE

Type	Start	End	Confidence
Cytoplasmic	1	21	0.98
Transmembrane Helix	22	43	0.94
Non-Cytoplasmic	44	402	0.99