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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|47558704, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.57
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKNIQQEKD KAKPVFYDPK GRRNIAFISF LCISIVSVSI VFYFFFQSIF STPEIPNMNN  60
   61 AVQQDNKLVP INQKLSDQQL KREDFKPNTE TKDNKNLVNS PKDSKQPKEV YGFYVNWDEN 120
  121 STASLKENID SLTTLVPEWY HLKADLTIRS EIKPEIVKLA EKNQVKIMPL LTNYTEEASG 180
  181 PDSGLIHKLL NSSNDVKTKF VNDLVKQVEK NRFAGINIDF EAIPESDREN VTNFMKELTT 240
  241 VFHKHDLLVT QDVPANDKAF DYSALAKVID RMIVMMYDEH YGAGEPGPIA SNKWFQHTLK 300
  301 ELNIPSNKLV VAFGNYGYDW KVKSKEPAKS LTFSEVMAMA HNSNMKIQWD KSSGNPYFRY 360
  361 KTGEKEHTAW FLDGVTLYNQ VKIAMDNNAK GFALWRLGAE DPTIWKVLKN PVEAQKNPDV 420
  421 LHKITSLDEV NYSGQGEILQ IENEKQNGLR DFKVGKDGYL TDEVYQILPS AYEVQRYGKP 480
  481 KGKQVVLTFD DGPDPKYTPE ILDILKENKI KAAFFVLGEN AQLNTSIVKR IYDEGHEIGN 540
  541 HTFKHPNVAD TSLLRTKVEL NTTQRLIQEI TGHSTVLFRP PYEADANPDS SNEILPILRA 600
  601 QNMNYTMVAE KVDPEDWATP STNELVKRAL NPVYKGEGNI ILLHDAGGNR THTVEALPII 660
  661 IKELKKHGYS FVTISDLMNK ERDEIMPPVS SEGEQYLLYN KAVFLGAGYF KHMLTTIFYI 720
  721 AIGLGIFRFL FLIYFAWKQK RKTLSRIIHS SYQPFVSVVI AAYNEEKVIA KTIRSILDSK 780
  781 YGEFEVIVVD DGSTDGTSKV MKETFYKHPK VRFIQKENGG KSSAMNLGFQ QSRGEIIVTL 840
  841 DADTIIAQDA ISLMVRHFED QNVAAVSGNV QVGNRRNLLT TWQHVEYITG FNLERRAFDE 900
  901 LNCITVVPGA IGAWRKKDVV ESGYLSEDTL AEDTDLTITF LRQGHRIVYE EKAYAFTESP 960
  961 EDVKSLIKQR YRWSYGTLQC LWKHRKALFN TKQKTLGFIA LPNMWLFQYV LQFIAPFADI1020
 1021 LMIMGLFSSD PLKVLGFYFV FFLMDLLASL FAFKLEEENP KPLVWLILQR FIYRQFMTYV1080
 1081 VVKSIFSSIR GIAVGWNKLK RMGSVKHSTE HKEVS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle