YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47564422, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLKKSPLLL LIITFIFVIT GLGFTYFKHN KTIPSKNNVT KKNWLDDPYL RWSYTHMKEF  60
   61 TLINEVNHNP DQVSHFSTAL QNLDDFAVER RLGNTTPLKK LLDDNKTDAF VVVHNGQLVY 120
  121 ERYFNGYNES EPHGMASLAK VFTGAIIQSL AEENRIDLEK TADTYIKELK NTPFGKATLQ 180
  181 QLMDMQVSVE YPTHGYEHPA LENQDAQLYL ASNILPRGKN YDGPMKIYDM LREAEETAPP 240
  241 GSDFSYDNGS AETLAWIIRT ITGKSLAENV SERIWSQIGM EENAYYVTDE TKVEQASAGL 300
  301 NATARDMARF GQLLLNNGEY NGKQILPSSI TEDIKNVQEG ELAVGPGASI SYHNQWWIPH 360
  361 NEQGAFEVLG SYGQTLYIDP KANMVIVHFS SNATPSNEIH SVYSNMYIDI AHHLEKLPQ

Type	Start	End	Confidence
Signal Peptide	1	23	0.78
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	419	0.99