YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47558565, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKKTSKTKK FFGFVITAAI ATTTLVGTVN AQTTTNNYKV ASNANTVFTD VPKEHWSKDA  60
   61 IDYLAAAGIY KGYGNGKFGF GDNVTRGQVA SLVNRHLGLI ADDKQGNMFS DITNHMFEKD 120
  121 IKAIAQAGIM TGDGTGTFRP DDVLTRYEMA VILQRAFHLE SKEQGKFKDV PKGHWAYEAV 180
  181 NTLRSNRIAQ GDEAGNFNGN TFVKREQYAQ FFYNAIAKNR DYNFNINSKE ELKQMLTTAL 240
  241 QNGTFGPFKL NSLGKDLSEV KKEYGAPDVL KKASCTECDA PNIAVYGDYN IDMYPWDARY 300
  301 ISVKMDITIN ELKEWFGEPD GIGEDMTSEG FIYNRGSYSL YFSFSDGYIQ RAEISKNKFN 360
  361 Y

Type	Start	End	Confidence
Signal Peptide	1	31	0.99
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	361	0.99