YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47567645, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.86
Transmembrane Helix	12	35	0.87
Cytoplasmic	36	56	0.86
Transmembrane Helix	57	85	0.72
Non-Cytoplasmic	86	90	0.60
Transmembrane Helix	91	111	0.82
Cytoplasmic	112	138	0.87
Transmembrane Helix	139	159	0.91
Non-Cytoplasmic	160	173	0.91
Transmembrane Helix	174	195	0.91
Cytoplasmic	196	203	0.85
Transmembrane Helix	204	225	0.92
Non-Cytoplasmic	226	232	0.79
Transmembrane Helix	233	256	0.89
Cytoplasmic	257	292	0.93
Transmembrane Helix	293	316	0.86
Non-Cytoplasmic	317	353	0.92
Transmembrane Helix	354	374	0.95
Cytoplasmic	375	393	0.88
Transmembrane Helix	394	415	0.86
Non-Cytoplasmic	416	419	0.78
Transmembrane Helix	420	441	0.86
Cytoplasmic	442	499	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQLIEWLVG QVWSIGLVIF ALGAGVYFTI ATRFLQIRYF KEMIKLLFEG KSSETGISSF  60
   61 QAFCLALSGR VGIGNIAGVA TAIAFGGPGA VFWMWVMALL GAASAFVEST LSQVYKNKVG 120
  121 NEYRGGTPYF IEKGLKMKWF AVIVAVVVTL SYGVLLPGIQ SSSIAVGFEN SNGISKYITG 180
  181 ILLVILLAAI IFGGVKRIAG VSQMLVPFMA IGYVIVTCIV LIANVTEIPS MFALIFSSAF 240
  241 GVNEMFGGIV GAAIAWGVKR AVFSNVAGVG EATYSSAAAE VSHPAKQGLV QAFSVYIDTI 300
  301 VVCTATALMI LITGMYNVIP EGKSALVKNM GNVDAGPIYT QQAVETVMTG FGPLFISIAI 360
  361 FFFAFTTLLA YYYIAETTLT YLDREVKYSW LKPVLKIGFL IMVYIGSVES ASLLWNLGDL 420
  421 GIGSMAWLNL IAILLLSKIA LKVLKDYEAQ KKVGKDPVFD PKNVGIEGLT FWEERSKEVQ 480
  481 RKNSKEQAVV DDSLKLQFK