YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47556584, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	18	0.98
Transmembrane Helix	19	39	0.95
Non-Cytoplasmic	40	71	0.88
Transmembrane Helix	72	92	0.92
Cytoplasmic	93	100	0.80
Transmembrane Helix	101	120	0.95
Non-Cytoplasmic	121	125	0.79
Transmembrane Helix	126	147	0.92
Cytoplasmic	148	155	0.92
Transmembrane Helix	156	178	0.94
Non-Cytoplasmic	179	202	0.80
Transmembrane Helix	203	224	0.87
Cytoplasmic	225	243	0.88
Transmembrane Helix	244	267	0.92
Non-Cytoplasmic	268	284	0.75
Transmembrane Helix	285	305	0.78
Cytoplasmic	306	313	0.59
Transmembrane Helix	314	333	0.93
Non-Cytoplasmic	334	342	0.65

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESSEVVREK EHPFAKKRWI IAVSLVILTI LSLFYGLFAG SLSFSLRDIL TGIQDEGSTV  60
   61 HRIVWDLRIP RVLVGFIVGT CLAASGALLQ GVMRNPLADP GIIGVSSGAG LVAIVIMILF 120
  121 PQHMAFLPLG AFLGAFITAM VIYALSWQKG APPSRIVLVG VSINALIGAA TSALMLLHSD 180
  181 KVQSVLPWLA GGIGGVSWAH LNMIIYYAIF AIILAFFGIK HIRVLMLGDE MAKLLGHNVE 240
  241 RSRFYLIVVS TLLAGIAVSV SGLIGFVGLV VPHMLRLLVG NDYKYLLPLS CLGGGILLVF 300
  301 ADAIARSWFD PIELPVGILL SFLGGPFFLY LIHRGGKRSD FR