YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47556739, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFTMVQKLWL TVVCAVFVTV SFLYFVSLYS YEKLYVDNLK DSLVMEGKRL AAQYDKREGI  60
   61 STFEEKVRAF DQISSSDVLF VSNPRDLSAC LPFDVHHHSL ISEGDRQALL DGKTVTKVGY 120
  121 EEHFDRNIMG VVIPVLENKK LVGIVYSYIP LKSIKDLIYD MGLILAPLAL AITLLTIWVG 180
  181 RKIIIAITRP LSQMERVANH LATGDFSERI TISSEDEIGR LGKAFNKMAN SLETEDVKRK 240
  241 EFLANVSHEL RTPLSYIKGY SEAILDGVAK GPQQEKVTQL IHKEADRMQR LVHDLLDLAQ 300
  301 LEGEHFPLKK QPIVFSQLIE DVLDTYEIKF IEKKICISTN LNPEIIVMID EDRMQQVLHN 360
  361 VLDNAIRYTN QNGAIMITLR QIDDYCELSI KDTGIGIDTE HLENLGQRFY RVDKARSRQH 420
  421 GGTGLGLAIV RQIVHIHDGQ WRIESAKGNG TTVSIKLKVQ DEESMF

Type	Start	End	Confidence
Cytoplasmic	1	7	0.54
Transmembrane Helix	8	28	0.87
Non-Cytoplasmic	29	156	0.63
Transmembrane Helix	157	180	0.76
Cytoplasmic	181	466	0.51