YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|228625942, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.95
Transmembrane Helix	12	34	0.93
Cytoplasmic	35	54	0.96
Transmembrane Helix	55	78	0.89
Non-Cytoplasmic	79	84	0.79
Transmembrane Helix	85	103	0.93
Cytoplasmic	104	122	0.86
Transmembrane Helix	123	142	0.93
Non-Cytoplasmic	143	156	0.82
Transmembrane Helix	157	176	0.93
Cytoplasmic	177	183	0.74
Transmembrane Helix	184	202	0.95
Non-Cytoplasmic	203	207	0.78
Transmembrane Helix	208	226	0.97
Cytoplasmic	227	232	0.81
Transmembrane Helix	233	254	0.90
Non-Cytoplasmic	255	259	0.81
Transmembrane Helix	260	281	0.93
Cytoplasmic	282	305	0.91
Transmembrane Helix	306	329	0.87
Non-Cytoplasmic	330	330	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGGLHVLEQ GLLVTAGVAF LISVALSPLF IPFLRKLKFG QSIRDEGPKS HQKKSGTPTM  60
   61 GGIVIYVSMM VTSLIMAIKF NRLGAEVSLL LLVTFGYGLI GFLDDYIKVV KKRNLGLTSK 120
  121 QKLVGQLVIA IAFFLIGKGQ AFHTYIMIPG TDVKFELGWA YFVLVLFMLI GGSNAVNLTD 180
  181 GLDGLLSGTA AIAFGAFSII AVAQEQFGVA IFCMAVVGAV LGFLVFNANP AKVFMGDTGS 240
  241 LALGGAIAAV AILLKQELLL VIIGGVFVME TLSVIIQVIS FKTTGKRVFK MSPLHHHYEL 300
  301 CGWSEWRVVV TFWSVGFLLA VLGIYIGVWM