YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47557485, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.91
Transmembrane Helix	9	29	0.91
Non-Cytoplasmic	30	35	0.71
Transmembrane Helix	36	54	0.96
Cytoplasmic	55	72	0.87
Transmembrane Helix	73	97	0.84
Non-Cytoplasmic	98	106	0.72
Transmembrane Helix	107	128	0.87
Cytoplasmic	129	138	0.59
Transmembrane Helix	139	162	0.72
Non-Cytoplasmic	163	195	0.59
Transmembrane Helix	196	215	0.89
Cytoplasmic	216	233	0.55
Transmembrane Helix	234	253	0.85
Non-Cytoplasmic	254	259	0.41
Transmembrane Helix	260	275	0.83
Cytoplasmic	276	276	0.05
Transmembrane Helix	277	291	0.42
Non-Cytoplasmic	292	307	0.51
Transmembrane Helix	308	334	0.76
Cytoplasmic	335	349	0.49
Transmembrane Helix	350	375	0.82
Non-Cytoplasmic	376	416	0.53
Transmembrane Helix	417	450	0.71
Cytoplasmic	451	467	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSVRLPSML EIIVLLLLFL AVVFSFQTIF DLPIQLALFI SWFLVIALGL RLGFRYQELQ  60
   61 DAITKGISNG LEAILILVAV GALIGTWIAG GVVPTLIYYG LEFIHPSIFL LATLIICSIT 120
  121 SIATGTSWGT VGTAGIAMMA IGEGLGLPLP LVAGAVLSGA YFGDKLSPLS DSTVLAASMA 180
  181 KVDVIAHVRA MLVLDVPAYI ITSIMFTVAG WMYGGDNVDL NRVEFLKEAL LKQFDIKIWM 240
  241 LVPAVIVIAL LAMKKPSMPT IAMGALIGAI WATLFQGMNF GEAIGTAYNG FSIQSGVEFV 300
  301 DKLLNRGGIN GMLGSVAVII FGLGFGGLLE KLGVLKVIVS KFEKKLNSAG NVTLSTLIVA 360
  361 FLANIFGCAM YVSLILTPKI MEDSYDKLKI DRRVLARNSE VGGTLTSGMV PWSDNGIFMA 420
  421 GILGVATFSY VPFMWLSFVS LILAVIYGYT GKFIWYVDDA EKGKEAS