YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|41745538
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	80	0.98
Transmembrane Helix	81	101	0.94
Non-Cytoplasmic	102	108	0.71
Transmembrane Helix	109	135	0.81
Cytoplasmic	136	154	0.72
Transmembrane Helix	155	178	0.75
Non-Cytoplasmic	179	187	0.80
Transmembrane Helix	188	206	0.96
Cytoplasmic	207	215	0.80
Transmembrane Helix	216	238	0.87
Non-Cytoplasmic	239	258	0.89
Transmembrane Helix	259	282	0.86
Cytoplasmic	283	300	0.89
Transmembrane Helix	301	322	0.92
Non-Cytoplasmic	323	351	0.94
Transmembrane Helix	352	374	0.80
Cytoplasmic	375	401	0.88
Transmembrane Helix	402	421	0.94
Non-Cytoplasmic	422	429	0.83
Transmembrane Helix	430	452	0.92
Cytoplasmic	453	474	0.92
Transmembrane Helix	475	495	0.93
Non-Cytoplasmic	496	509	0.87
Transmembrane Helix	510	531	0.88
Cytoplasmic	532	581	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEKKFEAVQ TGAEAPPAYG DSSPTRGGIG QRIFDSFKRD PNHTVTGHVG ADGSGFDAET  60
   61 AAHNTAHSPL QRRLKGRHLQ MIAIGGSIGT GLFVGSGSVL ATGGPASVLI AYILIGCMLY 120
  121 CTVHALGEMA VLFPVAGSFA HYSTRFVDPA WGFAMGWNYA LQWLIVLPLE IVAASITVDY 180
  181 WNPGVSNAAW VTIFWVMIVS INLFGVRGYG EAEFVFSLIK VIAVIGFIIL GIILNCGGGP 240
  241 QGGYIGARYW YDPGAFRNGF KGLCSVFVNA AFAFAGTELV GLAAAETTNP RKSLPTAVKQ 300
  301 VFWRIALFYI VSLTLVGLLV RYDDERLISG SSSADAKASP FVIAIENAGI KALPSIMNVV 360
  361 IMIAVLSVGN SSVYGSSRTL AALAEQGQAP KFLAYIDRKG RPLPAIIIAS ILGLLSYLAA 420
  421 SDVQTTAFEW MMAISGLSSI FTGVPCVRAH ILFRRAWKKQ GHSLDELAFR SQPGVIGSWV 480
  481 GFIFNCLVLV AQFWVGFAPI GYADMTSQEI AYKFFSVYLA APVVLICYIG YKIMYKTKFV 540
  541 RTSEVDLVTG RRDLDIQHLI EQEMAEQREW PKWKKVYKFF C