YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ADSL3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDKNKDDSS SQSKAVRKEK RAFLFRKWTR VDVMRVSAVG AVHLLCLLAP FNYTWEAFRF  60
   61 AAMVGISTNL SITFSYHRNL THRSFKLPKW LEYPFAYSAL FALQGHPIDW VSTHRFHHQF 120
  121 TDSDRDPHSP IEGFWFSHVF WIFDTSYIRE KCGGRDNVMD LKQQWFYRFL QNTIGLHILT 180
  181 FWILVYLWGG LPYLTWSVGV GGAIGYHATW LINSACHIWG SRAWNTKDTS RNIWWLGPFT 240
  241 MGESWHNNHH AFEASARHGL EWYQVDLTWY LIWFFQVLGL ATDVKLPTDA QKRKMSLAR

Type	Start	End	Confidence
Cytoplasmic	1	30	0.98
Transmembrane Helix	31	51	0.92
Non-Cytoplasmic	52	57	0.78
Transmembrane Helix	58	77	0.92
Cytoplasmic	78	168	0.73
Transmembrane Helix	169	188	0.87
Non-Cytoplasmic	189	192	0.57
Transmembrane Helix	193	220	0.66
Cytoplasmic	221	231	0.74
Transmembrane Helix	232	249	0.54
Non-Cytoplasmic	250	266	0.67
Transmembrane Helix	267	286	0.69
Cytoplasmic	287	299	0.90