YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TOM2A_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MACRGCLECL LKLLNFLLAV AGLGMIGYGI YLFVEYKRVT DNSVTFDLTN GDQSYVSFGR  60
   61 PILMAVSLSS NIFDNLPKAW FIYLFIGIGV ALFVISCCGC VGTCSRSVCC LSCYSLLLIL 120
  121 LILVELGFAA FIFFDNSWRD ELPSDRTGNF DTIYNFLREN WKIVRWVALG AVVFEALLFL 180
  181 LALMVRAANT PAEYDSDDEY LAPRQQIRQP FINRQAAPVT GVPVAPTLDQ RPSRSDPWSA 240
  241 RMREKYGLDT SEFTYNPSES HRFQQMPAQP NEEKGRCTIM

Type	Start	End	Confidence
Cytoplasmic	1	12	0.85
Transmembrane Helix	13	32	0.95
Non-Cytoplasmic	33	79	0.96
Transmembrane Helix	80	102	0.94
Cytoplasmic	103	110	0.79
Transmembrane Helix	111	134	0.90
Non-Cytoplasmic	135	162	0.97
Transmembrane Helix	163	184	0.91
Cytoplasmic	185	280	0.96