YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27413475
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.95
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	20	0.94
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	418	0.99
Transmembrane Helix	419	441	0.92
Cytoplasmic	442	450	0.87
Transmembrane Helix	451	473	0.88
Non-Cytoplasmic	474	496	0.88
Transmembrane Helix	497	517	0.92
Cytoplasmic	518	537	0.85
Transmembrane Helix	538	560	0.91
Non-Cytoplasmic	561	579	0.91
Transmembrane Helix	580	605	0.89
Cytoplasmic	606	625	0.95
Transmembrane Helix	626	647	0.90
Non-Cytoplasmic	648	662	0.81
Transmembrane Helix	663	682	0.69
Cytoplasmic	683	764	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPADLLQLV LLLVLPRDLG GKGCSSPPCE CQQEEDFRVT CKDIQRIPSL PPSTQTLKLI  60
   61 ETRLRTIPSH AFSSLPNISR IYLSIDATLQ QLETHSFYNL NKVTHIEIRN TRSLTYIDPD 120
  121 ALKELPLLKF LGIFNTGLKM FPDLTKVYST DIFFILEITD NPYMTSIPVN AFQGLCNETL 180
  181 TLKLYNNGFT SIQGYAFNGT KLDAVYLNKN KYLTVIDKDA FGGVYSGPSL LDVSHTSVTA 240
  241 LPSKGLEHLK ELIARNTWTL KKLPLSLSFL HLTRADLSYP SHCCAFKNQK KIRGIPESLM 300
  301 CNESSMQSLR QRKSVNALNS PLHQEYEENL DDGIVGYKEK SKFQDAHNNA HYYVFFEEQE 360
  361 DEIIGFGQEL KNPQEETLQA FDSHYDYTVC GDNEDMVCTP KSDEFNPCED IMGYKFLRIV 420
  421 VWFVSLLALL GNVFVLLILL TSHYKLNVPR FLMCNLAFAD FCMGMYLLLI ASVDLYTHSE 480
  481 YYNHAIDWQT GPGCNTAGFF TVFASELSVY TLTVITLERW YAITFAMRLD RKIRLRHACA 540
  541 IMVGGWVCCF LLALLPLVGI SSYAKVSICL PMDTETPLAL AYIVFVLTLN IVAFVIVCCC 600
  601 YVKIYITVRN PQYNPGDKDT KIAKRMAVLI FTDFICMAPI SFYALSAILN KPLITVSNSK 660
  661 ILLVLFYPLN SCANPFLYAI FTKAFQRDVF ILLSKFGICK RQAQAYRGQR VPPKNSTDIQ 720
  721 VQKVTHEMRQ DLHNMQDVYE LLENSHLTPK KQGQISEEYT QTVL