YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MTPC1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIIRFQILN PTRICRSTIY YMSCRYLPSS SSSSSPLRVS SSSSQKPSFD FSRRWHFGHP  60
   61 DHHQQYQKPG EEGEKIFRLG LTADIGLSVA KALTGYLCGS TAIIADAAHS VSDVVLSGVA 120
  121 LVSYRAANVP KDKEHPYGHG KFETLGALGI SAMLLATGSG IAWHALDLLS IALSAAPEVI 180
  181 HSGHHHGIDM NHPILALTVT IASISIKEGL YWITKRAGEK QGSGLMMANA WHHRSDAISS 240
  241 LVALVGVGGS ILGVNFLDPL AGLVVSTMIV NAGLKTGHQS ILELVDAAIP AQQLEPIRQT 300
  301 ILQVEGVKGC HRLRGRRAGS SLYLDVHIVV DPFSSVSVAH EVGEYVRRQI NLNHPEVSEV 360
  361 FIHIDPAFLQ FSCSTKDHDS ITKESNICQE IKHVEATVSD IFSSQLSEKL TIKRITPHLL 420
  421 HSKILLQIVV AMPSTMSIQD VMIAAEHAEK EILKAAPNVA RVSIQLSLNS E

Type	Start	End	Confidence
Cytoplasmic	1	144	0.87
Transmembrane Helix	145	166	0.89
Non-Cytoplasmic	167	191	0.86
Transmembrane Helix	192	211	0.85
Cytoplasmic	212	234	0.82
Transmembrane Helix	235	257	0.81
Non-Cytoplasmic	258	471	0.67