YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30090032
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.67
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPVGGVAGS SRSAACCAVL LAAVLFFSAP ATTEAYDSLD PNGNITIKWD IISWTPDGYV  60
   61 ATVTMFNYQQ FRHIPAPGWQ LGWSWAKKEV IWSMVGAQAT EQGDCSKFKS APPHCCKRDP 120
  121 TIVDLLPGTP FNQQIANCCK AGVIKTFNQD PGNAASSFQI SVGLAGTTNK TVKMPKNFTL 180
  181 RAPGPGYTCG RALVGRPTKY YSSDGRRVTQ ALMSWNVTCT YSQFLAQKTP TCCVSLSSFY 240
  241 NDTIVNCPTC SCGCQNNITR PGSCVNDNSP YLQSAINGPG KLTGQPLVQC TSHMCPIRIH 300
  301 WHVKLNYKDY WRVKVTITNF NYRMNYTDWN MVAQHPNFDN ITKLFSFNYK PLTPYGGRIN 360
  361 DTAMFWGMKF YNDLLNQAGP LGNAQSELLM RKDSETFTFQ KGWAFPRRVY FNGDNCVMPS 420
  421 PDDYPWLPSA SPLTKQPWTL PLLVFWTALA TLLAYYV

Type	Start	End	Confidence
Signal Peptide	1	35	0.96
N-region	1	26
H-region	27	32
C-region	33	35
Cleavage Site	35	36
Non-Cytoplasmic	36	437	0.99
Transmembrane Helix	438	456	0.65
Cytoplasmic	457	457	0.67