YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|241917716, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.70
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAGGRSVAC CAAVLLAAAL LLSAPTTTEA YDSLDPTGNI TIKWDIMQWT PDGYVAVVTM  60
   61 YNFQQFRHIG APGWQLGWTW AKKEVIWSMV GAQTTEQGDC SKFKGNTPHC CKKDPTIVDL 120
  121 LPGTPYNMQI ANCCKAGVIN TFNQDPANAA SSFQISVGLA GTTNKTVKVP KNFTLKTPGP 180
  181 GYTCGRAIVG RPTKFWSADG RRATQALMTW NVTCTYSQFL AQKTPSCCVS LSSFYNDTIV 240
  241 NCPTCSCGCQ NPSGSNCVNE DSPNLQAAID GPGKWTGQPL VQCTSHMCPI RIHWHVKLNY 300
  301 KEYWRVKITI TNFNFRMNYT QWNLVAQHPN FDNITQLFSF NYKPLTPYGG GINDTAMFWG 360
  361 VKFYNDLLMQ AGKLGNVQSE LLLRKDSRTF TFDKGWAFPR RVYFNGDNCV MPSPENYPWL 420
  421 PNASPLTRQP LTLPLLVFWV ALAALLAYA

Type	Start	End	Confidence
Signal Peptide	1	30	0.99
N-region	1	21
H-region	22	27
C-region	28	30
Cleavage Site	30	31
Non-Cytoplasmic	31	429	0.99
Transmembrane Helix	430	448	0.66
Cytoplasmic	449	449	0.69