YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50808293
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALRSATHLP IPCATAASPP RPSMGLLRLP LLHAAPVGTP EPRKIEEIKD FLLTARRKDA  60
   61 KSVKIKKNKD NVKFKVRCSR YLYTLVITDK EKAEKLKQSL PPVNILTAVA LSRLAPKTKK 120
  121 SSYWYLLALT TSDILTQVFI IFVGFILQTA ILARAVPRAF FHIDNVLEFT ANHASIWVTV 180
  181 LLTVDRYVAL CHPLRYRTVS YPRRTRRIIA AVFAVALATG IPFNWFPAPW RDANAFFALD 240
  241 RVLKWVHCVT IYFLPCSIFL AAHSVIIRKL KQRGRSGGRR PHRGKTTALL LAVTAVFIVL 300
  301 WAPRTAVMMC HLYVASVKRD WRVHLALDVA NMAAMLNTTL NFFLYCFVSD TFRRAVSEVL 360
  361 RAHAWHGLRH GGARLVSPTL SPSQLLGTAC SARGCRHAGV SVLTQHP

Type	Start	End	Confidence
Cytoplasmic	1	122	0.93
Transmembrane Helix	123	147	0.81
Non-Cytoplasmic	148	168	0.77
Transmembrane Helix	169	189	0.84
Cytoplasmic	190	207	0.88
Transmembrane Helix	208	228	0.92
Non-Cytoplasmic	229	244	0.94
Transmembrane Helix	245	267	0.92
Cytoplasmic	268	286	0.93
Transmembrane Helix	287	307	0.91
Non-Cytoplasmic	308	328	0.85
Transmembrane Helix	329	348	0.87
Cytoplasmic	349	407	0.92