YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30313362, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWLPMLGLT ALPHLGGLYG GYVTRKQVKT WYTTLNKPSW RPPNAAFPIV WTTLYTGMGY  60
   61 GSYLVWKECG GFTEDAVVPL GFYGLQLALN WAWTPIFFGA HKLKMALIEI VMLTGAVGAT 120
  121 MVSWYPVNRT ASLLLTPYLA WLCLATSLNY CIWRDNPDED EKEE

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.65
Transmembrane Helix	6	23	0.70
Cytoplasmic	24	43	0.88
Transmembrane Helix	44	64	0.88
Non-Cytoplasmic	65	75	0.81
Transmembrane Helix	76	97	0.83
Cytoplasmic	98	105	0.75
Transmembrane Helix	106	127	0.89
Non-Cytoplasmic	128	133	0.78
Transmembrane Helix	134	153	0.83
Cytoplasmic	154	164	0.85