YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TOM1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDSGLMMPA EIAGILTTAI TSWWDDVNES TQWQDGIFFA LCGAYALVSA VALVQLIRIQ  60
   61 MRVPEYGWTT QKVFHLMNFV VNGVRAVLFG FHMQVFLVHP KALCWVLLDL PGLLFFSAYT 120
  121 LLVLFWAEIY HQARSLPTDK LRITYISVNV AVYLAQIGIW AYIWVHDNST VELVGKIFIA 180
  181 VVSFIAALGF LLYGGRLFFM LRRFPIESKG RRKKLHEVGS VTAICFTCFL IRCVVVAVSA 240
  241 FDKDLTLDVL DHPVLNLIYY MVVEVLPSAL VLFILRKLPP KRVSAQYHPI Q

Type	Start	End	Confidence
Cytoplasmic	1	6	0.69
Transmembrane Helix	7	24	0.77
Non-Cytoplasmic	25	35	0.87
Transmembrane Helix	36	57	0.94
Cytoplasmic	58	73	0.90
Transmembrane Helix	74	96	0.87
Non-Cytoplasmic	97	104	0.83
Transmembrane Helix	105	127	0.86
Cytoplasmic	128	142	0.87
Transmembrane Helix	143	164	0.93
Non-Cytoplasmic	165	176	0.83
Transmembrane Helix	177	199	0.92
Cytoplasmic	200	217	0.94
Transmembrane Helix	218	241	0.90
Non-Cytoplasmic	242	256	0.91
Transmembrane Helix	257	275	0.97
Cytoplasmic	276	291	0.93