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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|50806606
Protein type: Transmembrane
Type Confidence: 0.90
Topology Confidence: 0.29
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEWVVELQV CAQLGAGDLV ASVAVKKHGV TADGWDFFTL LALLGLGVIS TACMAPLEPG  60
   61 KLLCAESSAA AGIVPRTQFT WSSPSLFCFL FDVLKIPRKQ VSAAFGFILS SEQEELLCAE 120
  121 LLNEALGCVG ASKQQHRPAA PRPRWLCCPK LSRVEVRPCP AAVLTAAVRS EQGLLAELPH 180
  181 TDSHVSETTQ ESQWAVFRCA LKLQTAADLL HSTGLRSALL GCCSSSVPST PFSRAAVQHR 240
  241 AAGWACSHRH PQHLRLLTFP TSSLSSCAFH AFSICLLTLK AADALRAEVL LQADCSQQAE 300
  301 VHGQDQYVLL HHFIGIHFVA LIAVVIGKSR QAFGHRSLFS DQLCLPALNG LVHLLSLKPG 360
  361 PELCVPPHTH RSHCTHALMH VTQKDDSSQE GPQAHGCRWP SKANRAGVAS LCQEQPVGEH 420
  421 YCFPNGLQGM ESQVTVTESR VSQFWSAYQE KKAKLIREES RILRVKVVSG IDLAKKDIFG 480
  481 ASDPYVKLSL YVADENRELA LVQTKTIKKT LNPKWNEEFY FRVNPTNHRL LFEVFDENRL 540
  541 TRDDFLGQVD VPLSHLPTED PSMERPYTFK DFLLRPRSHK SRVKGFLRLK MAYMPKNGGQ 600
  601 EEENSDQRDE SEHGWDVVDS SDSASQRQEE LPPPPLPPGW EEKVDNLGRT YYVNHNNRTT 660
  661 QWHRPSLIDV GSDSDNNIRQ INHEAAHRRF RSRRHISEDL EPEPLETGDI PEPWEAISEE 720
  721 ASATGDTLSL SLPPPPASPV SRSSPQELSE ELSRRLQITP DSNGEQLSSL IQRDPSSRLR 780
  781 SCSVTDTVAE QSQLSLPSVA YVHTTPGLPS GWEERKDAKG RTYYVNHNNR TTTWTRPIMQ 840
  841 LAEDGMVGSA ANNNNHLSEP QIRRPRSLSS PTVTLSAPLE GMKDSPVRRA VKDTLSNPQS 900
  901 PQPSPYNSPK PQHKVAQSFL PPGWEMRIAP NGRPFFIDHN TKTTTWEDPR LKFPVHLRTK 960
  961 ASLNPNDLGP LPPGWEERIH LDGRTFYIDH NNKITQWEDP RLQNPAITGP AVPYSREFKQ1020
 1021 KYDYFRKKLK KPADIPNRFE MKLHRNNIFE ESYRRIMSVK RPDVLKARLW IEFESEKGLD1080
 1081 YGGVAREWFF LLSKEMFNPY YGLFEYSATD NYTLQINPNS GLCNEDHLSY FTFIGRVAGL1140
 1141 AVYHGKLLDG FFIRPFYKMM LGKPITLKDM ESVDSEYYNS LKWILENDPT ELDLMFCIDE1200
 1201 ENFGQTYQVD LKPNGSEIMV TNENKREYID LVIQWRFVNR VQKQMNAFLE GFTELLPIDL1260
 1261 IKIFDENELE LLMCGLGDVD VNDWRQHTIY KNGYCPNHPV IQWFWKAVLL MDAEKRIRLL1320
 1321 QFVTGTSRVP MNGFAELYGS NGPQLFTIEQ WGTPDKLPRA HTCFNRLDLP LYESFDDLRE1380
 1381 KLLMAVENAQ GFEGVD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle