YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50806268
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLLLPFDSL VVNLLGISIT VLFTLLLVFI IVPAIFGVSF GIRKVYMKTL LKIFQWATLR  60
   61 IERGAKEKNH PLYKPYVNGI IAKEPTSLEE EIKEIRRSGS GKALDAPEFE LSDIFYFCRK 120
  121 GIETIMDDEV TKRFSAEELE SWNLLSRTNY NFHYISLRLT VLWGLGVLIR YCFLLPLRIA 180
  181 LAFTGISLLV TGTTVVGYLP NGRCKEFLSK HVHLMCYRIC VRALTAIITY HDRENRPRNG 240
  241 GICVANHTSP IDVIILASDG YYAMVGQVHG GLMGVIQRAM VKACPHVWFE RSEVKDRHLV 300
  301 AKRLTEHVQD KSKLPILIFP EGTCINNTSV MMFKKGSFEI GATVYPVAIK YDPQFGDAFW 360
  361 NSSKYGMVTY LLRMMTSWAI VCSVWYLPPM TRQCDEDAVQ FANRVKSAIA RQGGLVDLLW 420
  421 DGGLKREKVK DTFKEEQQKL YSKMIVGNHE DRSRS

Type	Start	End	Confidence
Non-Cytoplasmic	1	16	0.85
Transmembrane Helix	17	42	0.87
Cytoplasmic	43	153	0.94
Transmembrane Helix	154	174	0.86
Non-Cytoplasmic	175	178	0.77
Transmembrane Helix	179	200	0.89
Cytoplasmic	201	368	0.71
Transmembrane Helix	369	387	0.47
Non-Cytoplasmic	388	455	0.58