YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50805870
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.14
Topology Confidence:	0.32
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFLSSTAGS SLAGGSLWQL QEVVTKMTGK NAVLNYSSYG CYCGVGGHGQ PKDATDRCCQ  60
   61 LHDTCYDNLQ RYHCNAKKQR YKYSWHSGRL TCKEQKELQL ALRPVPQVQV QVMSTCKVKT 120
  121 LQQGKIGRAA PVSPPGAGKR KMKVLLMPAL LLACGMLTAR GKHPHTFAPG LEGSTVGNLT 180
  181 AHGCGSGWGR GRAAFMDRCC LLRACCYARL TARRCRVGQT QRLPAPQPGV PVCTFQTPTI 240
  241 RSFPEAERWK LLRKSGEASP RSLKGDASPT GAHWHPSAFQ TPTIRSFPEA ERWKLLRKSV 300
  301 SRHDAAGGLA ATGCTLDTLG SSCSSAAHHE AMKLLVLLVC LAVLAPAGCN IAQFGIMIKE 360
  361 KTGKPALSYN GYGCHCGLGG SKYPVDATDW CCHAHDCCYK RLSSVTCVPH LATYKFSIKR 420
  421 GQITCGSGSS CQRAACECDK KAAECFKRNL RTFNKSYQNY LNFKCKGSRP SC

Type	Start	End	Confidence
Signal Peptide	1	19	0.32
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	333	0.61
Transmembrane Helix	334	356	0.57
Cytoplasmic	357	472	0.49