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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: GAGT1_ARATH
Protein type: Globular with Signal Peptide
Type Confidence: 0.96
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLVRTVTIV LFIIAFLQNA AAQKRQQSIV KSRGAVATDD GRCSVIGMRV LREGGNAIDA  60
   61 SVAAALCLGV VSPASSGIGG GAFTVVKIAG GKEIAYDSRE TAPLRATENM YGGNVDLKKK 120
  121 GALSVGVPGE VAGLFTAWKQ HGKLPWKRLV TPAEKLAEGF KISKYLYMQM NATRSDILAD 180
  181 KGLSDLFVSN GELKKPGTIC HNPKLALTLK LIGEYGPKAF YNGTVGVNLA RDIKKSGGII 240
  241 TLKDLQSYRV KIKEPLSADI LGYRVLGMPP PSSGGAAMML VLNILSQYGI PSGVSGPLGV 300
  301 HRLIEALKHA FAVRMNLGDP DFTDVTKVVS DMLSPKFAKD LKSKINDQKT FDPKYYGGMW 360
  361 NQIDDHGTSH LSIIDRERNA VSMTSTINGY FGALMLSPST GIVLNNEMDD FSIPMKSNGN 420
  421 LDVPPPAPAN FIRPGKRPLS SMSPTIVLKD GKVKAAVGAS GGANIIAGTT EVYLNHFFLK 480
  481 MDPLSSVLAP RIYHQLIPNR ASYENWTTVF NDHFEIPKAT RVVLEKKGHV LSPIAGGTIA 540
  541 QFIVQESGEN SGGRSELVAV SDPRKGGFPS GY

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle