YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50800491
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAATDRRAQA GGAGACAVSL SLWLRGGHRR LQGEGWAGAG VPLVAAAMFL RAALRAAASR  60
   61 SVRQIRYLHK TPACSSSGGA LFVHRDSPEN NPDTPFEFTP ENKKRIEAII SNYPGGHKSA 120
  121 AVMAVLDLAQ RQHGWLPISA MNKVAEILEM PPMRVYEVAT FYTMYNRKPV GKYHIQVCTT 180
  181 TPCMLRDSDS ILEAIQKKLG IKVGETTPDK LFTLIEVECL GACVNAPMVQ INDNYYEDLT 240
  241 PKDIEDIIDE LKAGKVPKPG PRSGRFSCEP AGGLTSLTEP PKGPGFGVRA DL

Type	Start	End	Confidence
Cytoplasmic	1	7	0.78
Transmembrane Helix	8	27	0.78
Non-Cytoplasmic	28	34	0.72
Transmembrane Helix	35	54	0.89
Cytoplasmic	55	292	0.68