YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50798652
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	95	0.99
Transmembrane Helix	96	118	0.94
Non-Cytoplasmic	119	138	0.93
Transmembrane Helix	139	161	0.86
Cytoplasmic	162	178	0.87
Transmembrane Helix	179	199	0.90
Non-Cytoplasmic	200	206	0.80
Transmembrane Helix	207	229	0.93
Cytoplasmic	230	236	0.90
Transmembrane Helix	237	257	0.91
Non-Cytoplasmic	258	305	0.62
Transmembrane Helix	306	327	0.88
Cytoplasmic	328	346	0.55
Transmembrane Helix	347	368	0.80
Non-Cytoplasmic	369	423	0.67
Transmembrane Helix	424	444	0.87
Cytoplasmic	445	478	0.87
Transmembrane Helix	479	498	0.81
Non-Cytoplasmic	499	501	0.53
Transmembrane Helix	502	522	0.75
Cytoplasmic	523	540	0.67

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GILTQSPQLG ERPPQGAAGG SGQRGPQRRL RGPLRAASRD GGGGNAVGEG SGADSGEAAA  60
   61 GPAAMGIKFL EVIKPFCAVL PEIQKPERKI QFREKVLWTA ITLFIFLVCC QIPLFGIMSS 120
  121 DSADPFYWMR VILASNRGTL MELGISPIVT SGLIMQLLAG AKIIEVGDTP KDRALFNGAQ 180
  181 KLFGMIITIG QAIVYVMTGM YGDPAEMGAG ICLLIIIQLF VAGLIVLLLD ELLQKGYGLG 240
  241 SGISLFIATN ICETIVWKAF SPTTINTGRG TEFEGAVIAL FHLLATRTDK VRALREAFYR 300
  301 QNLPNLMNLI ATVFVFAVVI YFQGFRVDLP IKSARYRGQY SSYPIKLFYT SNIPIILQSA 360
  361 LVSNLYVISQ MLSVRFSGNF LVNLLGQWAD VSGGGPARSY PVGGLCYYLS PPESMGAIFE 420
  421 DPVHVIVYII FMLGSCAFFS KTWIEVSGSS AKDVAKQLKE QQMVMRGHRD TSMVHELNRY 480
  481 IPTAAAFGGL CIGALSVLAD FLGAIGSGTG ILLAVTIIYQ YFEIFVKEQA EVGGVGALFF 540
  541