YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|254938326, gi...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	299	0.75
Transmembrane Helix	300	324	0.82
Cytoplasmic	325	342	0.72
Transmembrane Helix	343	365	0.79
Non-Cytoplasmic	366	376	0.70
Transmembrane Helix	377	404	0.83
Cytoplasmic	405	422	0.79
Transmembrane Helix	423	444	0.92
Non-Cytoplasmic	445	459	0.71
Transmembrane Helix	460	480	0.87
Cytoplasmic	481	487	0.65
Transmembrane Helix	488	522	0.74
Non-Cytoplasmic	523	539	0.44
Transmembrane Helix	540	561	0.60
Cytoplasmic	562	567	0.63
Transmembrane Helix	568	590	0.84
Non-Cytoplasmic	591	605	0.65
Transmembrane Helix	606	626	0.94
Cytoplasmic	627	632	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRITDLLSKD VMIMSLQATT KEAAIDEMIA SLKSNGKIND EVLFKEAIMN REAQSSTGVG  60
   61 EGIAMPHAKT KAVNEPTVVF AKSEKGLDYD ALDGQPAHLF FMIAAPDGAN ATHLETLAAL 120
  121 SRLLVHPAFV QSLRDAKTPE EVINLFNNEQ EDSEETVVAP TSTNDTGKSV VAVTACPTGI 180
  181 AHTYMAAEKL QETANKLGVR IKVETNGSRG VENRLTDKEI AEADGVIIAA DVQVDMPRFD 240
  241 GKHLIAKPVA AGIHKPEELI KEAISGNAPI YKAEEGSQAT ESADGLSIGQ QIYKHLMSGV 300
  301 SHMLPFVIGG GIAIAIAFML DQMLGVPQDQ LAKLGSYNEI PALLKQIGDV AFGFMLPVFA 360
  361 GYIAYSISDR PGLVAGFVAG GVASVGGAGF LGALVGGFLA GYAVELIKLA LKKLPKTLDG 420
  421 IKVVLFYPVL SVLIVGLLML LLNVPMSALN TWLNDFLNSL SGTNAVILGL LLGAMMAADL 480
  481 GGPINKAAYI FATGTLAASV ATGGSAIMAA TMAAGMVPPL ATFVATLIFR NKFTAQERDA 540
  541 GLTNSILGAS FITEGAIPFA AADPLRMIPS FIAGSAITGA IVMFLNIKVL APHGGVFVIF 600
  601 LVSQPWFYII AIIIGTLISA GLIGVLRKKP TV