YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47016201, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIAFLTIET AFFWGTFLTK KKRGVYFFMQ NKRLIILLEC AIFAAVAMVL SFIPLDIGSS  60
   61 FSISLGMIPM YVIAIRRGFW AAGFAGLLWG LLHFLTGKAY ILMPSQAIIE YILAFSFIAF 120
  121 SGVFSKQVRS NLAANQLKKA IEWAWGTMII GGLARYFWHY VAGVLFWGAY AFQGWGAQLF 180
  181 SIVMNGASCL GTVLVSGIII SILLKTSPKL FLPK

Type	Start	End	Confidence
Cytoplasmic	1	32	0.48
Transmembrane Helix	33	55	0.85
Non-Cytoplasmic	56	56	0.35
Transmembrane Helix	57	75	0.52
Cytoplasmic	76	77	0.60
Transmembrane Helix	78	97	0.87
Non-Cytoplasmic	98	106	0.63
Transmembrane Helix	107	125	0.91
Cytoplasmic	126	142	0.82
Transmembrane Helix	143	162	0.83
Non-Cytoplasmic	163	181	0.72
Transmembrane Helix	182	204	0.93
Cytoplasmic	205	214	0.93