YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TR110_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSQIISTSD IFTFTIILFV ELVIGILGNG FIALVNIMDW TKRRSISSAD QILTALAITR  60
   61 FLYVWFMIIC ILLFMLCPHL LTRSEIVTSI GIIWIVNNHF SVWLATCLGV FYFLKIANFS 120
  121 NSLFLYLKWR VKKVVLMIIQ VSMIFLILNL LSLSMYDQFS IDVYEGNTSY NLGDSTPFPT 180
  181 ISLFINSSKV FVITNSSHIF LPINSLFMLI PFTVSLVAFL MLIFSLWKHH KKMQVNAKPP 240
  241 RDASTMAHIK ALQTGFSFLL LYAVYLLFIV IGMLSLRLIG GKLILLFDHI SGIGFPISHS 300
  301 FVLILGNNKL RQASLSVLHC LRCRSKDMDT MGP

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.89
Transmembrane Helix	15	38	0.90
Cytoplasmic	39	60	0.88
Transmembrane Helix	61	82	0.91
Non-Cytoplasmic	83	94	0.81
Transmembrane Helix	95	114	0.88
Cytoplasmic	115	133	0.82
Transmembrane Helix	134	154	0.93
Non-Cytoplasmic	155	205	0.91
Transmembrane Helix	206	227	0.92
Cytoplasmic	228	254	0.85
Transmembrane Helix	255	276	0.87
Non-Cytoplasmic	277	284	0.72
Transmembrane Helix	285	306	0.87
Cytoplasmic	307	333	0.91