YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TR102_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNMESVLHNF ATVLIYVEFI FGNLSNGFIV LSNFLDWVIK QKLSLIDKIL LTLAISRITL  60
   61 IWEIYAWFKS LYDPSSFLIG IEFQIIYFSW VLSSHFSLWL ATTLSVFYLL RIANCSWQIF 120
  121 LYLKWRLKQL IVGMLLGSLV FLLGNLMQSM LEERFYQYGR NTSVNTMSND LAMWTELIFF 180
  181 NMAMFSVIPF TLALISFLLL IFSLWKHLQK MQLISRRHRD PSTKAHMNAL RIMVSFLLLY 240
  241 TMHFLSLLIS WIAQKHQSEL ADIIGMITEL MYPSVHSCIL ILGNSKLKQT SLCMLRHLRC 300
  301 RLKGENITIA YSNQITSFCV FCVANKSMR

Type	Start	End	Confidence
Non-Cytoplasmic	1	12	0.83
Transmembrane Helix	13	35	0.83
Cytoplasmic	36	48	0.72
Transmembrane Helix	49	68	0.88
Non-Cytoplasmic	69	85	0.92
Transmembrane Helix	86	110	0.83
Cytoplasmic	111	129	0.82
Transmembrane Helix	130	149	0.93
Non-Cytoplasmic	150	182	0.92
Transmembrane Helix	183	208	0.87
Cytoplasmic	209	228	0.94
Transmembrane Helix	229	252	0.87
Non-Cytoplasmic	253	262	0.88
Transmembrane Helix	263	284	0.61
Cytoplasmic	285	329	0.60