YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7109285
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.66
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQGDWVLLLL LGLRIHLSFG VIPVEEENPV FWNQKAKEAL DVAKKLQPIQ TSAKNLILFL  60
   61 GDGMGVPTVT ATRILKGQLG GHLGPETPLA MDHFPFTALS KTYNVDRQVP DSAGTATAYL 120
  121 CGVKANYKTI GVSAAARFNQ CNSTFGNEVF SVMHRAKKAG KSVGVVTTTR VQHASPAGTY 180
  181 AHTVNRDWYS DADMPSSALQ EGCKDIATQL ISNMDIDVIL GGGRKSMFPK GTPDPEYPGD 240
  241 SDQSGVRLDS RNLVEEWLAK YQGTRYVWNR EQLMRASQDP AVTRLMGLFE PTEMKYDVNR 300
  301 NASADPSLAE MTEVAVRLLS RNPQGFYLFV EGGRIDQGHH AGTAYLALTE AAMFDSAIEK 360
  361 ASQLTNEKDT LTLITADHSH VFAFGGYTLR GTSIFGLAPL NAQDGKSYTS ILYGNGPGYV 420
  421 LNSGNRPNVT DAESGDVNYK QQAAVPLSSE THGGEDVAIF ARGPQAHLVH GVQEQNYIAH 480
  481 VMAFAGCLEP YTDCGLAPPA DENRPTTPVQ NSAITMNNVL LSLQLLVSML LLVGTALVVS 540
  541

Type	Start	End	Confidence
Signal Peptide	1	20	0.85
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	519	0.98
Transmembrane Helix	520	539	0.71
Cytoplasmic	540	540	0.72