YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50797812
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTRAFRAEP SLSLPYLGRF SQRAAPSLAA DDVAEARRGP FSPPARPKVP AELGAGLAEG  60
   61 GGGGAFPAAP GTMMVGKTSA IAAGLCGALF IGYCIYFDRK RRSDPNFKNR LRERRKKQKL 120
  121 AKERAGLSKL PDLKDAEAVQ KFFLEEIQLG EELLAQGEYE KGVDHLTNAI AVCGQPQQLL 180
  181 QVLQQTLPPP VFQMLLTKLP TISQRIVSAQ CLAEDDVE

Type	Start	End	Confidence
Cytoplasmic	1	48	0.75
Transmembrane Helix	49	69	0.61
Non-Cytoplasmic	70	77	0.64
Transmembrane Helix	78	97	0.91
Cytoplasmic	98	218	0.88