YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30698907, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSKNNGLSA ALVSNLQDVL SKRKVGNEEK VGSDGSAEEA PSTSDSVDVA SVEEEIDDSR  60
   61 PIVLVTNGDG IDSPGLVSLV EALVLEGLYN VHVCAPQTDK SASAHSTTPG ETIAVSSVKL 120
  121 KGATAFEVSG TPVDCISLGL SGALFAWSKP ILVISGINQG SSCGHQMFYS GAVAGGREAL 180
  181 ISGVPSLSIS LNWKKNESQE SHFKDAVGVC LPLINATIRD IAKGVFPKDC SLNIEIPTSP 240
  241 SSNKGFKVTK QSMWRQYPSW QAVSANRHPG AGNFMSNQQS LGAQLAQLGR DASAAGAARR 300
  301 FTTQKKSIVE IESVGVAGKT DTRVKKFFRL EFLAKEQEHT DEDLDVKALE DGFVSVTPFS 360
  361 LLPKTDSETQ AAASEWISKA LNSDQ

Type	Start	End	Confidence
Signal Peptide	1	21	0.60
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	385	0.99