YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47019771, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.96
Transmembrane Helix	21	41	0.95
Cytoplasmic	42	60	0.85
Transmembrane Helix	61	81	0.94
Non-Cytoplasmic	82	109	0.94
Transmembrane Helix	110	131	0.91
Cytoplasmic	132	159	0.90
Transmembrane Helix	160	181	0.91
Non-Cytoplasmic	182	197	0.91
Transmembrane Helix	198	220	0.89
Cytoplasmic	221	229	0.88
Transmembrane Helix	230	251	0.94
Non-Cytoplasmic	252	289	0.95
Transmembrane Helix	290	309	0.93
Cytoplasmic	310	317	0.87
Transmembrane Helix	318	342	0.88
Non-Cytoplasmic	343	369	0.94
Transmembrane Helix	370	395	0.84
Cytoplasmic	396	413	0.87
Transmembrane Helix	414	433	0.94
Non-Cytoplasmic	434	440	0.76
Transmembrane Helix	441	463	0.92
Cytoplasmic	464	483	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKQFEAFTT NIQKFLTSNF GWYYLIVVAI IIIFCLFLVL SPIGSIRLGK PGEEPGYSNK  60
   61 SWFAMLFSAG MGIGLVFWGA AEPLSHYAVQ APGGEVGTQA AMKDALRYSF FHWGISAWSI 120
  121 YAIVALALAY FKFRKNAPGL ISATLYPILG KHAKGPIGQL IDIIAVFATV IGVATTLGLG 180
  181 AQQINGGLTY LFGVPNNFTV QFTIIIIVTI LFMLSAMSGL DKGIQLLSNV NIYVAGVLLV 240
  241 LTLILGPTLF IMNNFTNSFG DYLQNIIQMS FQTAPDAPDA RKWIDSWTIF YWAWWLSWSP 300
  301 FVGIFIARIS RGRTIRQFLL GVIVLPALVS VFWFAVFGGS AIFVEQHGNS GLSSLATEQV 360
  361 LFGVFNEFPA GMVLSIVAMI LIAVFFITSA DSATFVLGMQ TTGGSLNPPN SVKVTWGLLQ 420
  421 AGIASVLLYA GGLTALQNAS IIAAFPFSIV IILMIVSLFV SLTREQEKLG LYVRPKKSQR 480
  481 SQL