YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|23297568, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.68
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKLMVPTWR PDPVYRPPET PLEPMEFLAR SWSVSALEVS KALTPPNPQI LLSKTEEEEE  60
   61 EEPISSVVDG DGDTEDTGLV TGNPFSFACS ETSQMVMDRI LSHSQEVSPR TSGRLSHSSG 120
  121 PLNGSLTDSP PVSPPESDDI KQFCRANKNS LNSVNSQFRS TAATPGPITA TATQSKTVGR 180
  181 WLKDRREKKK EETRAHNAQI HAAVSVAGVA AAVAAIAAAT AASSSCGKDE QMAKTDMAVA 240
  241 SAATLVAAQC VEAAEVMGAE REYLASVVSS AVNVRSAGDI MTLTAGAATA LRGVQTLKAR 300
  301 AMKEVWNIAS VIPMDKGLTS TGGSSNNVNG SNGSSSSSHS GELVQQENFL GTCSREWLAR 360
  361 GCELLKRTRK GDLHWKIVSV YINKMNQVML KMKSRHVGGT FTKKKKNIVL DVIKNVPAWP 420
  421 GRHLLEGGDD LRYFGLKTVM RGDVEFEVKS QREYEMWTQG VSRLLVLAAE RKFRM

Type	Start	End	Confidence
Cytoplasmic	1	199	0.58
Transmembrane Helix	200	221	0.63
Non-Cytoplasmic	222	475	0.88