YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MTPC4_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSSHRILSR LLHSPRKGYI RASVGGSVHF LALFDEKDNG FVDTTHRSFS SLIRSSSHVR  60
   61 GLISTNCLNK GLGVRCSVSL DRETPLIDTY SSHRNFFTRA KQVKRIEIND QHSQRAVTTA 120
  121 LWCNFLVFSL KFGVWWTSSS HVIMAEVVHS VADFANQALL AYGLSSSRRA PDALHPYGYS 180
  181 KERFVWSLIS AVGIFCLGSG ATIVNGVQNL WTSSPPPNME LAAVVIGGSF LIEGASLLVA 240
  241 IQSVKKGAAQ EGMTIRDYIW RGHDPTSVAV MTEDGAAVAG LAIAAASLVA VRMTGNPIYD 300
  301 PIGSIVVGNL LGMVAIFLIQ RNRHALIGRA MDDQDMSKVL KFLRNDSVVD SLYDCKSEVI 360
  361 GPGSFRFKAE IDFNGQMVVQ NYLKRTGREE WAKMFREAAK NGDDSAMLNI MSNYGEEVVT 420
  421 ALGSEVDRLE KEIQELVPGI QHVDIEAHNP TPTDPSL

Type	Start	End	Confidence
Cytoplasmic	1	115	0.85
Transmembrane Helix	116	135	0.70
Non-Cytoplasmic	136	142	0.54
Transmembrane Helix	143	164	0.64
Cytoplasmic	165	183	0.94
Transmembrane Helix	184	204	0.96
Non-Cytoplasmic	205	220	0.87
Transmembrane Helix	221	241	0.93
Cytoplasmic	242	269	0.85
Transmembrane Helix	270	291	0.85
Non-Cytoplasmic	292	300	0.71
Transmembrane Helix	301	319	0.97
Cytoplasmic	320	457	0.98