YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ZTP29_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSQMLVALG LSLVGGLSTS LGALFVVLSE TPNMKMLGLL QGFASGLMLS ISFLDLAHNA  60
   61 INSIGFFKAN LWFFGGVIFF ACITKFIPEP TLGPSTDGKR RKKNGDEGGK DMMKKHRKQV 120
  121 LYSGLITAIG ISLHNFPEGM AVFLGSIKGM RVGVNLALAI ALHNIPEGVA VALPIYFATE 180
  181 SKWQAFKLAT LSGLAEPLGV IIVAYLFPRS LSPEILEGLL GAVGGIMAFL TLHEMLPLAF 240
  241 DYAGQKQAVK AVFFGMACMS ASLYFLELSL PETMSL

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.81
Transmembrane Helix	7	28	0.95
Cytoplasmic	29	36	0.83
Transmembrane Helix	37	57	0.93
Non-Cytoplasmic	58	68	0.65
Transmembrane Helix	69	87	0.89
Cytoplasmic	88	119	0.87
Transmembrane Helix	120	137	0.91
Non-Cytoplasmic	138	155	0.74
Transmembrane Helix	156	178	0.85
Cytoplasmic	179	185	0.81
Transmembrane Helix	186	207	0.91
Non-Cytoplasmic	208	214	0.77
Transmembrane Helix	215	236	0.87
Cytoplasmic	237	247	0.74
Transmembrane Helix	248	268	0.89
Non-Cytoplasmic	269	276	0.78