YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20127012
Protein type:	Transmembrane
Type Confidence:	0.63
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQCVPNCHI DDTPAAATTT VRSTTAADIP ILDYEVAELT WENGQLGLHG LGPPRVTASS  60
   61 TKYSTGAGGT LESIVDQATR LPNPKPTDEL VPWFHHRSSR AAMAMDALVP CSNLVHEQQS 120
  121 KPGGVGSTRV GSCSDGRTMG GGKRARVAPE WSGGGSQRLT MDTYDVGFTS TSMGSHDNTI 180
  181 DDHDSVCHSR PQMEDEEEKK AGGKSSVSTK RSRAAAIHNQ SERKRRDKIN QRMKTLQKLV 240
  241 PNSSKTDKAS MLDEVIEYLK QLQAQVSMMS RMNMPSMMLP MAMQQQQQLQ MSLMSNPMGL 300
  301 GMGMGMPGLG LLDLNSMNRA AASAPNIHAN MMPNPFLPMN CPSWDASSND SRFQSPLIPD 360
  361 PMSAFLACST QPTTMEAYSR MATLYQQMQR QLPPPSNPK

Type	Start	End	Confidence
Non-Cytoplasmic	1	292	0.95
Transmembrane Helix	293	314	0.56
Cytoplasmic	315	399	0.57